{
  "_id": "6a104a33acfb0bcc41c9fa0f",
  "Package": "BMRMM",
  "Title": "An Implementation of the Bayesian Markov (Renewal) Mixed Models",
  "Version": "1.0.1",
  "Authors@R": "c(\nperson(given = \"Yutong\",family = \"Wu\",role = c(\"aut\", \"cre\"),email = \"yutong.wu@utexas.edu\"),\nperson(given = \"Abhra\",family = \"Sarkar\",role = c(\"aut\"),email = \"abhra.sarkar@utexas.edu\"))",
  "Author": "Yutong Wu [aut, cre], Abhra Sarkar [aut]",
  "Maintainer": "Yutong Wu <yutong.wu@utexas.edu>",
  "Description": "The Bayesian Markov renewal mixed models take sequentially\nobserved categorical data with continuous duration times, being\neither state duration or inter-state duration. These models\ncomprehensively analyze the stochastic dynamics of both state\ntransitions and duration times under the influence of multiple\nexogenous factors and random individual effect. The default\nsetting flexibly models the transition probabilities using\nDirichlet mixtures and the duration times using gamma mixtures.\nIt also provides the flexibility of modeling the categorical\nsequences using Bayesian Markov mixed models alone, either\nignoring the duration times altogether or dividing duration\ntime into multiples of an additional category in the sequence\nby a user-specific unit. The package allows extensive inference\nof the state transition probabilities and the duration times as\nwell as relevant plots and graphs. It also includes a synthetic\ndata set to demonstrate the desired format of input data set\nand the utility of various functions. Methods for Bayesian\nMarkov renewal mixed models are as described in: Abhra Sarkar\net al., (2018) <doi:10.1080/01621459.2018.1423986> and Yutong\nWu et al., (2022) <doi:10.1093/biostatistics/kxac050>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-10 08:20:18 UTC",
    "User": "root"
  },
  "Repository": "https://yutongwu96.r-universe.dev",
  "Date/Publication": "2024-04-23 02:34:52 UTC",
  "RemoteUrl": "https://github.com/cran/BMRMM",
  "RemoteRef": "HEAD",
  "RemoteSha": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
  "MD5sum": "bb221daaac28f041d52b23978514dc5d",
  "_user": "yutongwu96",
  "_type": "src",
  "_file": "BMRMM_1.0.1.tar.gz",
  "_fileid": "7bd36ba92f462de1d93e78e745794cef9fd679e1f8f7b84e4b4ec410a2631d7e",
  "_filesize": 247801,
  "_sha256": "7bd36ba92f462de1d93e78e745794cef9fd679e1f8f7b84e4b4ec410a2631d7e",
  "_created": "2026-05-10T08:20:18.000Z",
  "_published": "2026-05-22T12:21:07.445Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77378242769,
      "time": 134,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6902269637"
    },
    {
      "job": 77378242761,
      "time": 175,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6902273487"
    },
    {
      "job": 77378242663,
      "time": 246,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6902318496"
    },
    {
      "job": 77378242977,
      "time": 160,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6902312853"
    },
    {
      "job": 77378242555,
      "time": 162,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6902256377"
    },
    {
      "job": 77378242328,
      "time": 88,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7160328291"
    },
    {
      "job": 77378242725,
      "time": 103,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6902266644"
    },
    {
      "job": 77378243029,
      "time": 94,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6902265828"
    },
    {
      "job": 77378242781,
      "time": 105,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6902266849"
    }
  ],
  "_buildurl": "https://github.com/r-universe/yutongwu96/actions/runs/25623843625",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/BMRMM",
  "_commit": {
    "id": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
    "author": "Yutong Wu <yutong.wu@utexas.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.1\n",
    "time": 1713839692
  },
  "_maintainer": {
    "name": "Yutong Wu",
    "email": "yutong.wu@utexas.edu",
    "login": "yutongwu96",
    "uuid": 11933115
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "fields",
      "role": "Imports"
    },
    {
      "package": "logOfGamma",
      "role": "Imports"
    },
    {
      "package": "MCMCpack",
      "role": "Imports"
    },
    {
      "package": "multicool",
      "role": "Imports"
    },
    {
      "package": "pracma",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "yutongwu96",
      "count": 5,
      "uuid": 11933115
    }
  ],
  "_userbio": {
    "uuid": 11933115,
    "type": "user",
    "name": "yutongwu96"
  },
  "_downloads": {
    "count": 717,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BMRMM"
  },
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BMRMM.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "yutongwu96",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2021-11-15"
    },
    {
      "version": "0.0.2",
      "date": "2023-01-07"
    },
    {
      "version": "0.0.3",
      "date": "2023-01-21"
    },
    {
      "version": "1.0.0",
      "date": "2023-06-19"
    },
    {
      "version": "1.0.1",
      "date": "2024-04-22"
    }
  ],
  "_exports": [
    "BMRMM",
    "diag.BMRMM",
    "model.selection.scores"
  ],
  "_datasets": [
    {
      "name": "foxp2",
      "title": "Simulated FoxP2 Data Set.",
      "object": "foxp2",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Id",
        "Genotype",
        "Context",
        "Prev_State",
        "Cur_State",
        "Transformed_ISI"
      ],
      "rows": 17391,
      "table": true,
      "tojson": true
    },
    {
      "name": "foxp2sm",
      "title": "Shortened Simulated FoxP2 Data Set.",
      "object": "foxp2sm",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Id",
        "Genotype",
        "Context",
        "Prev_State",
        "Cur_State",
        "ISI"
      ],
      "rows": 69,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "BMRMM",
      "title": "Bayesian Markov Renewal Mixed Models (BMRMMs)",
      "topics": [
        "BMRMM"
      ]
    },
    {
      "page": "diag.BMRMM",
      "title": "MCMC Diagnostic Plots for Transition Probabilities and Duration Times",
      "topics": [
        "diag.BMRMM"
      ]
    },
    {
      "page": "foxp2",
      "title": "Simulated FoxP2 Data Set.",
      "topics": [
        "foxp2"
      ]
    },
    {
      "page": "foxp2sm",
      "title": "Shortened Simulated FoxP2 Data Set.",
      "topics": [
        "foxp2sm"
      ]
    },
    {
      "page": "hist.BMRMM",
      "title": "Histogram of Duration Times",
      "topics": [
        "hist.BMRMM"
      ]
    },
    {
      "page": "model.selection.scores",
      "title": "Model Selection Scores for the Number of Components for Duration Times",
      "topics": [
        "model.selection.scores"
      ]
    },
    {
      "page": "plot.BMRMMsummary",
      "title": "Plot Method for Visualizing BMRMM Summary",
      "topics": [
        "plot.BMRMMsummary"
      ]
    },
    {
      "page": "summary.BMRMM",
      "title": "Summary Method for Objects of Class 'BMRMM'",
      "topics": [
        "summary.BMRMM"
      ]
    }
  ],
  "_rundeps": [
    "coda",
    "dotCall64",
    "fields",
    "lattice",
    "logOfGamma",
    "maps",
    "MASS",
    "Matrix",
    "MatrixModels",
    "mcmc",
    "MCMCpack",
    "multicool",
    "pracma",
    "quantreg",
    "RColorBrewer",
    "Rcpp",
    "spam",
    "SparseM",
    "survival",
    "viridisLite"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "bmrmm",
  "_universes": [
    "yutongwu96"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-10T08:22:07.000Z",
      "distro": "noble",
      "commit": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
      "fileid": "853693199d2b3fbe8f1a4eefc2be29274645bd497ed61c8c4c68227b8eaefdf1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yutongwu96/actions/runs/25623843625"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-10T08:22:47.000Z",
      "distro": "noble",
      "commit": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
      "fileid": "98bf682d70d4ab40e94ca60392fadbdb0631ebb9c6d8c9cc0233be28298b75cd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yutongwu96/actions/runs/25623843625"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-10T08:30:29.000Z",
      "commit": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
      "fileid": "976cba8c60aaaf5ff1db12004e6011f47ea382eeaa640a6725accfb0da78cf4b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yutongwu96/actions/runs/25623843625"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-10T08:29:43.000Z",
      "commit": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
      "fileid": "feb72076ea65983c4c09c5a16a2f5b03b915892839ec4aa0551dda7c6a73cf93",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yutongwu96/actions/runs/25623843625"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-10T08:21:30.000Z",
      "commit": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
      "fileid": "681ed47b36f3b154f8e036365bed0f3a77067836869badf8f8f4c79532ee2705",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yutongwu96/actions/runs/25623843625"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-10T08:21:26.000Z",
      "commit": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
      "fileid": "96591c2abc25e0ded6a43e66a88f6d8e57b9a11ce172655a6c76cfea8abbd872",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yutongwu96/actions/runs/25623843625"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-10T08:21:29.000Z",
      "commit": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
      "fileid": "d47379d35d06f2237f8a09a847f15629c1a69b54d3d5ea22bcc226d60b09e110",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yutongwu96/actions/runs/25623843625"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.1",
      "date": "2026-05-22T12:20:42.000Z",
      "commit": "5a90712df9fd67fbe6b04b32f5a02f7ac12dc88d",
      "fileid": "e6288fcc28ffdf6ee4ae5fb052b50ac6f3c1d3ff3d11fb5d3bcb35ffb3a9dc64",
      "status": "success",
      "buildurl": "https://github.com/r-universe/yutongwu96/actions/runs/25623843625"
    }
  ]
}